/*
 * 
 */
package mxgstest;

import java.io.*;
import java.util.Date;
import java.util.logging.Level;
import java.util.logging.Logger;

/**
 * Provides basic test logging capabilities
 * <p>
 * This class
 *
 * @since 2014-04-03
 * @version 0.1
 * @author Jan Svoboda, DTU Space
 */
public class Output {

    static int subSectionErrs;
    static int sectionErrs;
    static int testErrs;
    public static String outname;
    public static String home;
             
    static PrintWriter testout;
    static boolean logToFile;

    static final String ANSI_RESET = "\u001B[0m";
    static final String ANSI_BLACK = "\u001B[30m";
    static final String ANSI_RED = "\u001B[31m";
    static final String ANSI_GREEN = "\u001B[32m";
    static final String ANSI_YELLOW = "\u001B[33m";
    static final String ANSI_BLUE = "\u001B[34m";
    static final String ANSI_PURPLE = "\u001B[35m";
    static final String ANSI_CYAN = "\u001B[36m";
    static final String ANSI_WHITE = "\u001B[37m";
      
    
    public Output() {
        logToFile = true;
    }

    /**
     *
     * @param testName
     * @param testProcedure
     * @throws java.io.IOException
     */
    public void printTestStart(String testName, String testProcedure) throws IOException {
        /* Clears the terminal, but works only on Linux */
        //System.out.println("\033[2J\n");

        /* Prepare the test start printout */
        StringBuilder msg = new StringBuilder();
        msg.append("*******************************************************************************\n");
        msg.append("*                              MXGS HW Test                                   *\n");
        msg.append("*                                                                             *\n");

        msg.append("* Test Name:  ").append(testName);
        msg.append(fill(Math.max(0, 320 - msg.length() - 2), " "));
        msg.append("*\n");

        msg.append("* Procedure:  ").append(testProcedure);
        msg.append(fill(Math.max(0, 400 - msg.length() - 2), " "));
        msg.append("*\n");

        msg.append("* Date:       ");

        Date date = new Date();
        msg.append(String.format("%tY-%<tm-%<td, %<tR", date));
        msg.append(fill(Math.max(0, 480 - msg.length() - 2), " "));
        msg.append("*\n");

        msg.append("*******************************************************************************");

        /* Print the message */
        System.out.println(msg.toString());
        if(logToFile) {
            try {
                System.out.println("TEST = "+System.getenv("TEST"));
                home=System.getProperty("user.home");
                String test=System.getenv("TEST");
                if(test==null) {
                    test="";
                }
                outname="PFM_"+test+String.format("%tY%<tm%<td_%<tH%<tM", date);
                try {
                    Process p;
                    p = Runtime.getRuntime().exec("mkdir "+home+"/Desktop/testoutput/"+outname);
                    p.waitFor();
                    p.destroy();
                } catch (InterruptedException ex) {
                    Logger.getLogger(Output.class.getName()).log(Level.SEVERE, null, ex);
                }
                
                testout = new PrintWriter(new BufferedWriter(new FileWriter(home+"/Desktop/testoutput/"+outname+"/"+outname+".txt")));
                testout.println("Step;Item;Verification;Low;Expected;High;Received;Result;Comment");
                testout.println(String.format("Date; %tY-%<tm-%<td, %<tR;;;;;;--;", date));
                testout.flush();
//                testout.close();
            } catch (IOException e) {
                System.out.println(e.getMessage());
                throw e;
            }
        }

        /* Reset the internal time and error counting variables */
        testErrs = 0;
    }

    /**
     *
     * @param sectionName
     */
    public void printSectionStart(String sectionName) {
        sectionErrs = 0;
        if(logToFile) {
            testout.println(sectionName+";;;;;;;--;");
            testout.flush();
        }
        System.out.println(sectionName);
    }
    
    /**
     *
     * @param subSectionName
     * @param subSectionItem
     */
    public void printSubSectionStart(String subSectionName, String subSectionItem) {
        subSectionErrs = 0;
        if(logToFile) {
            testout.println(subSectionName+";"+subSectionItem+";;;;;;--;");
            testout.flush();
        }
        System.out.println(subSectionName+" "+subSectionItem);
    }
    
    /**
     *
     * @param stepName
     * @param stepItem
     */
    public void printStepStart(String stepName,String stepItem) {
        if(logToFile) {
            testout.println(stepName+";"+stepItem+";;;;;;--;");
            testout.flush();
        }
        System.out.println(stepName+" "+stepItem);
    }
    
    /**
     *
     * @param stepName
     * @param stepItem
     * @param option
     */
    public void printStepStart(String stepName,String stepItem, String option) {
        if(logToFile) {
            testout.println(stepName+";"+stepItem+";"+option+";;;;;--;");
            testout.flush();
        }
        System.out.println(stepName+" "+stepItem);
    }
    
    
    public void printStepOut(String stepItem, String stepResult, String stepComment, boolean stepErr) {
        if(!stepErr) {
            subSectionErrs++;
        }
        if(logToFile) {
            testout.println(";;"+stepItem+";;;;;"+stepResult+";"+stepComment);
            testout.flush();
        }
    }
    
    public void printStepOut(String stepItem, String stepReceived, String stepResult, String stepComment, boolean stepErr) {
        if(!stepErr) {
            subSectionErrs++;
        }
        if(logToFile) {
            testout.println(";;"+stepItem+";;;;"+stepReceived+";"+stepResult+";"+stepComment);
            testout.flush();
        }
    }
    
    public void printStepOut(String stepItem, String stepExpected, String stepReceived, String stepResult, String stepComment, boolean stepErr) {
        if(!stepErr) {
            subSectionErrs++;
        }
        if(logToFile) {
            testout.println(";;"+stepItem+";;"+stepExpected+";;"+stepReceived+";"+stepResult+";"+stepComment);
            testout.flush();
        }
    }
    
    public void printStepOut(String stepItem, Integer stepExpected, Integer stepReceived, String stepResult, String stepComment, boolean stepErr) {
        if(!stepErr) {
            subSectionErrs++;
        }
        if(logToFile) {
            testout.println(";;"+stepItem+";;"+stepExpected+";;"+stepReceived+";"+stepResult+";"+stepComment);
            testout.flush();
        }
    }
    
    public void printStepOut(String stepItem, Long stepExpected, Long stepReceived, String stepResult, String stepComment, boolean stepErr) {
        if(!stepErr) {
            subSectionErrs++;
        }
        if(logToFile) {
            testout.println(";;"+stepItem+";;"+stepExpected+";;"+stepReceived+";"+stepResult+";"+stepComment);
            testout.flush();
        }
    }
    
    public void printStepOut(String stepItem, String stepLow, String stepExpected, String stepHigh, String stepReceived, String stepResult, String stepComment, boolean stepErr) {
        if(!stepErr) {
            subSectionErrs++;
        }
        if(logToFile) {
            testout.println(";;"+stepItem+";"+stepLow+";"+stepExpected+";"+stepHigh+";"+stepReceived+";"+stepResult+";"+stepComment);
            testout.flush();
        }
    }
    
    public void printStepOut(String stepItem, Integer stepLow, Integer stepExpected, Integer stepHigh, Integer stepReceived, String stepResult, String stepComment, boolean stepErr) {
        if(!stepErr) {
            subSectionErrs++;
        }
        if(logToFile) {
            testout.println(";;"+stepItem+";"+stepLow+";"+stepExpected+";"+stepHigh+";"+stepReceived+";"+stepResult+";"+stepComment);
            testout.flush();
        }
    }
    
    public void printStepOut(String stepItem, Long stepLow, Long stepExpected, Long stepHigh, Long stepReceived, String stepResult, String stepComment, boolean stepErr) {
        if(!stepErr) {
            subSectionErrs++;
        }
        if(logToFile) {
            testout.println(";;"+stepItem+";"+stepLow+";"+stepExpected+";"+stepHigh+";"+stepReceived+";"+stepResult+";"+stepComment);
            testout.flush();
        }
    }
    
    public void printStepOut(String stepItem, Long stepOffset, Long stepHigh, Long stepReceived, String stepResult, String stepComment, boolean stepErr) {
        if(!stepErr) {
            subSectionErrs++;
        }
        if(logToFile) {
            if(stepOffset==-1){
                testout.println(";;"+stepItem+";;;;;"+stepHigh+";"+stepReceived+";"+stepResult+";"+stepComment);
                testout.flush();
            }
            else if(stepOffset==-99) {
                testout.println(";;"+stepItem+";;;;;;;"+stepReceived+";"+stepResult+";"+stepComment);
                testout.flush();
            }
        }
    }
    
    public void printSubSectionEnd(String subSectionName) {
        String result;
        if(subSectionErrs==0){
            result="Passed;";
        }
        else {
            result="Failed;with "+subSectionErrs+" errors";
        }
        if(logToFile) {
            testout.println(subSectionName+";;;;;;;"+result);
            Date date = new Date();
            testout.println("Date; "+logTime()+";----;----;----;----;----;----;----");
            testout.flush();
        }
        sectionErrs+=subSectionErrs;
        subSectionErrs=0;
    }
    
    public void printSectionEnd(String sectionName) {
        String result;
        if(sectionErrs==0){
            result="passed;";
        }
        else {
            result="Failed;with "+sectionErrs+" errors";
        }
        if(logToFile) {
            testout.println(sectionName+";;;;;;;"+result);
            testout.println("****;****;****;****;****;****;****;****;****");
            testout.flush();
        }
        testErrs+=sectionErrs;
        sectionErrs=0;
    }
    
    public void printTestEnd() {
        String result;
        if(testErrs==0){
            result="passed;";
        }
        else {
            result="Failed;with "+testErrs+" errors";
        }
        if(logToFile) {
            testout.println(result);
            testout.println("****;****;****;****;****;****;****;****;****");
            testout.flush();
        }
    }

    /**
     *
     * @param stepNumber
     * @param stepStatus
     */
    public void printStepStatus(String stepNumber, boolean stepStatus) {
        printStepStatus(stepNumber, stepStatus, "UNKNOW ERROR");
    }

    /**
     *
     * @param stepNumber
     * @param stepStatus
     * @param errMsg
     */
    public void printStepStatus(String stepNumber, boolean stepStatus, String errMsg) {
        String msg;

        if (stepStatus) {

            msg = "Step: "
                    + stepNumber;
            msg = msg
                    + fill(Math.max(0, 17 - msg.length()), " ")
                    + " Time tag: "
                    + logTime()
                    + " Status: "
                    + ANSI_GREEN
                    + "PASSED"
                    + ANSI_RESET
                    + "\n";
        } else {
            msg = "Step: "
                    + stepNumber;
            msg = msg
                    + fill(Math.max(0, 17 - msg.length()), " ")
                    + " Time tag: "
                    + logTime()
                    + " Status: "
                    + ANSI_RED
                    + "FAILED"
                    + "\n"
                    + fill(18, " ")
                    /*
                    ADD ERROR MSG WRAPING 
                    */
                    + errMsg
                    + ANSI_RESET
                    + "\n";
        }

        System.out.print(msg);
    }
    
    
    /**
     *
     */
    public void printSectionStop() {

    }

    /**
     *
     */
    public void printTestStop() {

    }
/*    
    public void getObs() {
        try {
            TgfObservation tgfObs;
            PulseHeightSpectrumObservation phObs;
            SampledDetectorObservation sampObs;
            BackgroundObservation backObs;
            AuroralCaptureObservation aurObs;
            int nTGF, nPH,nSamp, nBack, nAur;
            
            nTGF=Basic.tgfObsCol.completedObservationsCount();
            if(nTGF>0) {
                for(int i=0;i<nTGF;i++) {
                    tgfObs= TgfObservation.getObservation(Basic.tgfObsCol.remove(0));
                    String dir=thisDir;
                    String Obs=tgfObs.toStringFull();
                    int TCP=tgfObs.observationTime.tcpCountFromDhpu.getInt();
                    w_head0 = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(dir+"TGF/"+"Obs_"+TCP+".txt"), "utf-8"));
                    w_head0.write(Obs);
                    w_head0.flush();
                    w_head0.close();
                    System.out.println("Collected TGF Observation to disk");
                }
            }
            nBack=Basic.backgroundObsCol.completedObservationsCount();
            if(nBack>0) {
                 for(int i=0;i<nBack;i++) {
                     backObs=BackgroundObservation.getObservation(Basic.backgroundObsCol.remove(0));
                     String dir=thisDir;
                     String Obs=backObs.toStringFull();
                     int TCP=backObs.observationTime.tcpCountFromDhpu.getInt();
                     w_head0 = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(dir+"Background/"+"Obs_"+TCP+".txt"), "utf-8"));
                     w_head0.write(Obs);
                     w_head0.flush();
                     w_head0.close();
                     System.out.println("Collected Background Observation to disk");
                 }
            }
            nPH=Basic.pulseheightObsCol.completedObservationsCount();
            if(nPH>0) {
                for(int i=0;i<nPH;i++) {
                    phObs=PulseHeightSpectrumObservation.getObservation(Basic.pulseheightObsCol.remove(0));
                    String dir=thisDir;
                    String Obs=phObs.toStringFull();
                    int TCP=phObs.observationTime.tcpCountFromDhpu.getInt();
                    w_head0 = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(dir+"Pulseheight/"+"Obs_"+TCP+".txt"), "utf-8"));
                    w_head0.write(Obs);
                    w_head0.flush();
                    w_head0.close();
                    System.out.println("Collected PulseHeight Spectrum Observation to disk");
                }
            }
            nSamp=Basic.sampledObsCol.completedObservationsCount();
            if(nSamp>0) {
                for(int i=0;i<nSamp;i++) {
                    sampObs=SampledDetectorObservation.getObservation(Basic.sampledObsCol.remove(0));
                    String dir=thisDir;
                    String Obs=sampObs.toStringFull();
                    int TCP=sampObs.observationTime.tcpCountFromDhpu.getInt();
                    w_head0 = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(dir+"Sampled/"+"Obs_"+TCP+".txt"), "utf-8"));
                    w_head0.write(Obs);
                    w_head0.flush();
                    w_head0.close();
                    System.out.println("Collected Sampled Detector Observation to disk: ");
                }
            }
            nAur=Basic.auroralObsCol.completedObservationsCount();
            if(nAur>0) {
                for(int i=0;i<nAur;i++) {
                    aurObs=AuroralCaptureObservation.getObservation(Basic.auroralObsCol.remove(0));
                    String dir=thisDir;
                    String Obs=aurObs.toStringFull();
                    int TCP=aurObs.observationTime.tcpCountFromDhpu.getInt();
                    w_head0 = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(dir+"Aurora/"+"Obs_"+TCP+".txt"), "utf-8"));
                    w_head0.write(Obs);
                    w_head0.flush();
                    w_head0.close();
                    System.out.println("Collected Auroral Capture Observation to disk");
                }
            }
        } catch (Exception ex) {
            Logger.getLogger(Output.class.getName()).log(Level.SEVERE, null, ex);
        }                
    }
    
     public void oldgetObs(MXGSEGSE egse) throws Throwable {
            int siz=egse.dhpu.getScienceTm().size();
            Tm science;
            scistr0="";
            for (int i=0;i<5;i++) {
                part_counts[i] = 0;
                init[i] = true;
                NofC[i]=0;
                NofB[i]=0;
            }
            String eol=System.getProperty("line.separator");
            String ObsId;
            IofObs=0;
            bytes=0;
            sec=0;
          
            try { 
                while(siz!=0){
                    for(int j=0; j<siz;j++) {
                        Thread.sleep(10);
                        science=egse.dhpu.getScienceTm().removeFirst();
                        scistr=science.hex().replaceAll("\\s+","").substring(2);
                        System.out.println(scistr.substring(6,8));
                        if(scistr.substring(6,8).equals("a0")) {
                            ityp=0;
                            if(!init[ityp]) {
                                System.out.println("Science initial, previous unfinished: "+scistr.substring(0, 8));
                            }
                            IofObs++;
                            init[ityp]=false;
                            ObsId=scistr.substring(12, 16);
                            w_head0 = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(thisDir+"TGF/"+"Head_"+ObsId+".txt"), "utf-8"));
                            w_head0.write("Head: "+eol+scistr.substring(0,8)+eol);
                            w_head0.flush();
                            w_head0.write("Observation ID: "+eol+scistr.substring(12,16)+eol);
                            w_head0.flush();
                            w_head0.write("Time of Latest TCP: "+eol+Integer.valueOf(scistr.substring(24,28),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(28,32),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(32,40),16)+eol);
                            w_head0.flush();
                            w_head0.write("Observation Time: "+eol+Integer.valueOf(scistr.substring(40,48),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(48,56),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(56,64),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(64,72),16)+eol);
                            w_head0.flush();
                            w_head0.write("Internal TMONs: "+eol+Integer.valueOf(scistr.substring(72,76),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(76,80),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(80,84),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(84,88),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(88,92),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(92,96),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(96,100),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(100,104),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(104,108),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(108,112),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(112,116),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(116,120),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(120,124),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(124,128),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(128,132),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(132,136),16)+eol);
                            w_head0.flush();
                            w_head0.write("Accepted Count Parameters: "+eol+Integer.valueOf(scistr.substring(136,140),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(140,144),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(144,148),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(148,152),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(152,156),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(156,160),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(160,164),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(164,168),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(168,170),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(170,172),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(172,174),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(174,176),16)+eol);
                               w_head0.write("Trigger Window Flags: "+eol+String.format("%16s",Integer.toBinaryString(Integer.valueOf(scistr.substring(176,180),16))).replace(' ', '0').substring(0,10)+eol);
                            w_head0.flush();
                            w_head0.write("Trigger Window Durations: "+eol+Integer.valueOf(scistr.substring(180,184),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(184,188),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(188,192),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(192,196),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(196,200),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(200,204),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(204,208),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(208,212),16)+eol);
                            w_head0.flush();
                            w_head0.write("Trigger Window Thresholds: "+eol+Integer.valueOf(scistr.substring(212,214),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(214,216),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(216,218),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(218,222),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(222,224),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(224,226),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(226,228),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(228,232),16)+eol);
                            w_head0.flush();
                            w_head0.write("MXGS Triggering Count: "+eol+scistr.substring(232,248)+eol);
                            w_head0.flush();
                            w_head0.write("MMIA Triggering Time: "+eol+Integer.valueOf(scistr.substring(248,256),16)+" ");
                               w_head0.write(Integer.valueOf(scistr.substring(256,264),16)+eol);
                            w_head0.flush();
                            w_head0.write("Number of Counts: "+Integer.valueOf(scistr.substring(264,272),16)+eol);
                            w_head0.flush();
                            w_head0.write(" "+eol);
                            w_head0.flush();
                            w_head0.close();
                            if(scistr.substring(16, 20).equals("0001")) {
                                init[ityp]=true;
                            }
                            w_counts0 = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(thisDir+"TGF/"+"Counts_"+ObsId+".txt"), "utf-8"));
                            int pos=272;
                            NofC[ityp]=Integer.valueOf(scistr.substring(pos-8, pos), 16);
                            System.out.println(scistr.substring(12, 16)+": "+NofC[ityp]+" "+scistr.substring(176, 178));
                            NofB[ityp]=2*Integer.valueOf(scistr.substring(20, 24), 16);
                            if(init[ityp]){
                                NofB[ityp]=NofB[ityp]-8;
                            }
                            NofB[ityp]=NofB[ityp]-(pos-24);
                            n=NofB[ityp]/16;
                            part_counts[ityp]=NofB[ityp]-16*n;
                            for(int i=0;i<n;i++){
                                w_counts0.write(scistr.substring(pos+i*16, pos+(i+1)*16)+eol);
                            }
                            if(part_counts[ityp]>0) {
                                w_counts0.write(scistr.substring(pos+n*16, pos+n*16+part_counts[ityp]));
                            }
                            if(init[ityp]) {
                                w_counts0.close();
                                if(part_counts[ityp]!=0) {
                                    System.out.println("part_counts not 0: "+part_counts[ityp]);
                                    System.out.println(NofB[ityp]+" "+n+" "+part_counts[ityp]);
                                    System.out.println(scistr);
                                }
                            }
                        } else if(scistr.substring(6, 8).equals("a1")) {
                            ityp=0;
                            if(init[ityp]) {
                                System.out.println("Science TM not initial: "+scistr.substring(0, 8));
                            } else {
                                if(scistr.substring(20, 24).equals("0001")) {
                                    init[ityp]=true;
                                }                                
                                int part_counts_old=part_counts[ityp];
                                NofB[ityp]=2*Integer.valueOf(scistr.substring(28, 32), 16);
                                if(init[ityp]){
                                    NofB[ityp]=NofB[ityp]-8;
                                }
                                if(part_counts_old>0){
                                    w_counts0.write(scistr.substring(32, 32+part_counts_old)+eol);
                                }
                                NofB[ityp]=NofB[ityp]-part_counts_old;
                                n=NofB[ityp]/16;
                                part_counts[ityp]=NofB[ityp]-16*n;
                                for(int i=0;i<n;i++){
                                    w_counts0.write(scistr.substring(32+part_counts_old+i*16, 32+part_counts_old+(i+1)*16)+eol);
                                }
                                if(part_counts[ityp]>0) {
                                    w_counts0.write(scistr.substring(32+part_counts_old+n*16, 32+part_counts_old+n*16+part_counts[ityp]));
                                }
                                if(init[ityp]) {
                                    w_counts0.close();
                                    if(part_counts[ityp]!=0) {
                                        System.out.println("part_counts not 0: "+part_counts[ityp]);
                                        System.out.println(NofB[0]+" "+n+" "+part_counts[ityp]);
                                        System.out.println(scistr);
                                    }
                                }        
                            }    
                        } else if(scistr.substring(6, 8).equals("a2")) {
                            ityp=1;
                            bytes=Integer.valueOf(scistr.substring(8, 12),16);
                            if(!init[ityp]) {
                                System.out.println("Science initial, previous unfinished: "+scistr.substring(0, 8));
                            }
                            IofObs++;
                            init[ityp]=false;
                            ObsId=scistr.substring(12, 16);
                            w_head1 = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(thisDir+"Background/"+"Head_"+ObsId+".txt"), "utf-8"));
                            w_head1.write("Head: "+eol+scistr.substring(0,8)+eol);
                            w_head1.flush();
                            w_head1.write("Observation ID: "+eol+scistr.substring(12,16)+eol);
                            w_head1.flush();
                            w_head1.write("Internal TMONs: "+eol+Integer.valueOf(scistr.substring(24,28),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(28,32),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(32,36),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(36,40),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(40,44),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(44,48),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(48,52),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(52,56),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(56,60),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(60,64),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(64,68),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(68,72),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(72,76),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(76,80),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(80,84),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(84,88),16)+eol);
                            w_head1.flush();
                            w_head1.write("Accepted Count Parameters: "+eol+Integer.valueOf(scistr.substring(88,92),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(92,96),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(96,100),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(100,104),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(104,108),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(108,112),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(112,116),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(116,120),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(120,122),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(122,124),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(124,126),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(126,128),16)+eol);
                            w_head1.flush();
                            w_head1.write("LED Pulse-Height Bin Boundaries: "+eol+Integer.valueOf(scistr.substring(128,132),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(132,136),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(136,140),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(140,144),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(144,148),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(148,152),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(152,156),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(156,160),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(160,164),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(164,168),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(168,172),16)+eol);
                            w_head1.flush();
                            w_head1.write("HED Pulse-Height Bin Boundaries: "+eol+Integer.valueOf(scistr.substring(172,176),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(176,180),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(180,184),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(184,188),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(188,192),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(192,196),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(196,200),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(200,204),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(204,208),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(208,212),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(212,216),16)+eol);
                            w_head1.flush();
                            w_head1.write("Trigger Window Durations: "+eol+Integer.valueOf(scistr.substring(216,220),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(220,224),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(224,228),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(228,232),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(232,236),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(236,240),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(240,244),16)+" ");
                               w_head1.write(Integer.valueOf(scistr.substring(244,248),16)+eol);
                            w_head1.flush();
                            w_head1.close();
                            w_counts1 = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(thisDir+"Background/"+"Background_"+ObsId+".txt"), "utf-8"));
                            sec=0;
                            scistr0=scistr.substring(248,bytes*2+12);
                            while(scistr0.length()>=600) {
                                sec++;
                                w_counts1.write("Second: "+eol+sec+eol);
                                w_counts1.write("Time of Latest TCP: "+eol+Integer.valueOf(scistr0.substring(0,4),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(4,8),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(8,16),16)+eol);
                                w_counts1.flush();
                                w_counts1.write("Observation Time: "+eol+Integer.valueOf(scistr0.substring(16,24),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(24,32),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(32,40),16)+eol);
                                w_counts1.flush();
                                w_counts1.write("SW Mode: "+eol+Integer.valueOf(scistr0.substring(40,41),16)+eol);
                                w_counts1.write("SW Submode: "+eol+Integer.valueOf(scistr0.substring(41,42),16)+eol);
                                w_counts1.write("DECF: "+eol+Integer.valueOf(scistr0.substring(42,44),16)+eol);
                                w_counts1.write("Total Count Ratemeters: "+eol+Integer.valueOf(scistr0.substring(44,52),16)+" ");
                                    w_counts1.write(Integer.valueOf(scistr0.substring(52,60),16)+eol);
                                w_counts1.write("DAU Total Rate: "+eol+Integer.valueOf(scistr0.substring(60,68),16)+eol);
                                w_counts1.flush();
                                w_counts1.write("Accepted Count Ratemeters: "+eol+Integer.valueOf(scistr0.substring(68,76),16)+" ");
                                    w_counts1.write(Integer.valueOf(scistr0.substring(76,84),16)+" ");
                                    w_counts1.write(Integer.valueOf(scistr0.substring(84,92),16)+" ");
                                    w_counts1.write(Integer.valueOf(scistr0.substring(92,100),16)+eol);
                                w_counts1.flush();
                                w_counts1.write("Calculated Background Rates: "+eol+Integer.valueOf(scistr0.substring(100,108),16)+" ");
                                    w_counts1.write(Integer.valueOf(scistr0.substring(108,116),16)+" ");
                                    w_counts1.write(Integer.valueOf(scistr0.substring(116,124),16)+" ");
                                    w_counts1.write(Integer.valueOf(scistr0.substring(124,132),16)+eol);
                                w_counts1.flush();
                                w_counts1.write("Trigger Window Thresholds: "+eol+Integer.valueOf(scistr0.substring(132,134),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(134,136),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(136,138),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(138,142),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(142,144),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(144,146),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(146,148),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(148,152),16)+eol);
                                   w_counts1.flush();
                                w_counts1.write("CZT Current Offset: "+eol);
                                for (int i=0;i<16;i++) {
                                    w_counts1.write(Integer.valueOf(scistr0.substring(152+i*4,156+i*1),16)+" ");
                                }
                                   w_counts1.write(eol);
                                   w_counts1.flush();
                                w_counts1.write("BGO Current Offset: "+eol);
                                for (int i=0;i<12;i++) {
                                    w_counts1.write(Integer.valueOf(scistr0.substring(216+4*i,220+4*i),16)+" ");
                                }
                                   w_counts1.write(eol);
                                   w_counts1.flush();
                                w_counts1.write("LED Pulse-height Binned Data: "+eol);
                                for (int i=0;i<10;i++) {
                                    w_counts1.write(Integer.valueOf(scistr0.substring(264+4*i,268+4*i),16)+" ");
                                }
                                   w_counts1.write(eol);
                                   w_counts1.flush();
                                w_counts1.write("HED Pulse-height Binned Data: "+eol);
                                for (int i=0;i<10;i++) {
                                    w_counts1.write(Integer.valueOf(scistr0.substring(304+4*i,308+4*i),16)+" ");
                                }
                                   w_counts1.write(eol);
                                   w_counts1.flush();
                                w_counts1.write("LED Time Binned Data: "+eol);
                                for (int i=0;i<31;i++) {
                                    w_counts1.write(Integer.valueOf(scistr0.substring(344+4*i,348+4*i),16)+" ");
                                }
                                   w_counts1.write(eol);
                                   w_counts1.flush();
                                w_counts1.write("HED Time Binned Data: "+eol);
                                for (int i=0;i<31;i++) {
                                    w_counts1.write(Integer.valueOf(scistr0.substring(468+4*i,472+4*i),16)+" ");
                                }
                                   w_counts1.write(eol);
                                   w_counts1.flush();
                                w_counts1.write("HED Time Binned Data: "+eol);
                                w_counts1.write(scistr0.substring(592,600)+eol);
                                
                            }
                        } else if(scistr.substring(6, 8).equals("a3")) {
                            ityp=1;
                            if(init[ityp]) {
                                System.out.println("Science TM not initial: "+scistr.substring(0, 8));
                            } else {
                                if(scistr.substring(20, 24).equals("0001")) {
                                    init[ityp]=true;
                                }                                
                                bytes=Integer.valueOf(scistr.substring(8, 12),16);
                                scistr0=scistr0.concat(scistr.substring(36,bytes*2+12));
                            while(scistr0.length()>=600) {
                                sec++;
                                w_counts1.write("Second: "+eol+sec+eol);
                                w_counts1.write("Time of Latest TCP: "+eol+Integer.valueOf(scistr0.substring(0,4),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(4,8),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(8,16),16)+eol);
                                w_counts1.flush();
                                w_counts1.write("Observation Time: "+eol+Integer.valueOf(scistr0.substring(16,24),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(24,32),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(32,40),16)+eol);
                                w_counts1.flush();
                                w_counts1.write("SW Mode: "+eol+Integer.valueOf(scistr0.substring(40,41),16)+eol);
                                w_counts1.write("SW Submode: "+eol+Integer.valueOf(scistr0.substring(41,42),16)+eol);
                                w_counts1.write("DECF: "+eol+Integer.valueOf(scistr0.substring(42,44),16)+eol);
                                w_counts1.write("Total Count Ratemeters: "+eol+Integer.valueOf(scistr0.substring(44,52),16)+" ");
                                    w_counts1.write(Integer.valueOf(scistr0.substring(52,60),16)+eol);
                                w_counts1.write("DAU Total Rate: "+eol+Integer.valueOf(scistr0.substring(60,68),16)+eol);
                                w_counts1.flush();
                                w_counts1.write("Accepted Count Ratemeters: "+eol+Integer.valueOf(scistr0.substring(68,76),16)+" ");
                                    w_counts1.write(Integer.valueOf(scistr0.substring(76,84),16)+" ");
                                    w_counts1.write(Integer.valueOf(scistr0.substring(84,92),16)+" ");
                                    w_counts1.write(Integer.valueOf(scistr0.substring(92,100),16)+eol);
                                w_counts1.flush();
                                w_counts1.write("Calculated Background Rates: "+eol+Integer.valueOf(scistr0.substring(100,108),16)+" ");
                                    w_counts1.write(Integer.valueOf(scistr0.substring(108,116),16)+" ");
                                    w_counts1.write(Integer.valueOf(scistr0.substring(116,124),16)+" ");
                                    w_counts1.write(Integer.valueOf(scistr0.substring(124,132),16)+eol);
                                w_counts1.flush();
                                w_counts1.write("Trigger Window Thresholds: "+eol+Integer.valueOf(scistr0.substring(132,134),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(134,136),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(136,138),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(138,142),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(142,144),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(144,146),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(146,148),16)+" ");
                                   w_counts1.write(Integer.valueOf(scistr0.substring(148,152),16)+eol);
                                   w_counts1.flush();
                                w_counts1.write("CZT Current Offset: "+eol);
                                for (int i=0;i<16;i++) {
                                    w_counts1.write(Integer.valueOf(scistr0.substring(152+i*4,156+i*1),16)+" ");
                                }
                                   w_counts1.write(eol);
                                   w_counts1.flush();
                                w_counts1.write("BGO Current Offset: "+eol);
                                for (int i=0;i<12;i++) {
                                    w_counts1.write(Integer.valueOf(scistr0.substring(216+4*i,220+4*i),16)+" ");
                                }
                                   w_counts1.write(eol);
                                   w_counts1.flush();
                                w_counts1.write("LED Pulse-height Binned Data: "+eol);
                                for (int i=0;i<10;i++) {
                                    w_counts1.write(Integer.valueOf(scistr0.substring(264+4*i,268+4*i),16)+" ");
                                }
                                   w_counts1.write(eol);
                                   w_counts1.flush();
                                w_counts1.write("HED Pulse-height Binned Data: "+eol);
                                for (int i=0;i<10;i++) {
                                    w_counts1.write(Integer.valueOf(scistr0.substring(304+4*i,308+4*i),16)+" ");
                                }
                                   w_counts1.write(eol);
                                   w_counts1.flush();
                                w_counts1.write("LED Time Binned Data: "+eol);
                                for (int i=0;i<31;i++) {
                                    w_counts1.write(Integer.valueOf(scistr0.substring(344+4*i,348+4*i),16)+" ");
                                }
                                   w_counts1.write(eol);
                                   w_counts1.flush();
                                w_counts1.write("HED Time Binned Data: "+eol);
                                for (int i=0;i<31;i++) {
                                    w_counts1.write(Integer.valueOf(scistr0.substring(468+4*i,472+4*i),16)+" ");
                                }
                                   w_counts1.write(eol);
                                   w_counts1.flush();
                                w_counts1.write("HED Time Binned Data: "+eol);
                                w_counts1.write(scistr0.substring(592,600)+eol);                                
                            }  
                            }
                        } else if(scistr.substring(6, 8).equals("a4")) {
                            ityp=2;
                            if(!init[ityp]) {
                                System.out.println("Science initial, previous unfinished: "+scistr.substring(0, 8));
                            }
                            bytes=Integer.valueOf(scistr.substring(8, 12),16);
                            IofObs++;
                            init[ityp]=false;
                            ObsId=scistr.substring(12, 16);
                            w_head2 = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(thisDir+"Pulseheight/"+"Head_"+ObsId+".txt"), "utf-8"));
                            w_head2.write("Head: "+scistr.substring(0,8)+eol);
                            w_head2.write("Obs.: "+scistr.substring(12,16)+eol);
                            w_head2.write("Time: "+Integer.valueOf(scistr.substring(24,28),16)+" ");
                               w_head2.write(Integer.valueOf(scistr.substring(28,32),16)+" ");
                               w_head2.write(Integer.valueOf(scistr.substring(32,40),16)+eol);
                            w_head2.flush();
                            w_head2.write("TCP: "+Integer.valueOf(scistr.substring(40,48),16)+" ");
                               w_head2.write(Integer.valueOf(scistr.substring(48,56),16)+eol);
                            w_head2.flush();
                            w_head2.write("Temp: "+Integer.valueOf(scistr.substring(56,60),16)+" ");
                               w_head2.write(Integer.valueOf(scistr.substring(60,64),16)+" ");
                               w_head2.write(Integer.valueOf(scistr.substring(64,68),16)+" ");
                               w_head2.write(Integer.valueOf(scistr.substring(68,72),16)+" ");
                               w_head2.write(Integer.valueOf(scistr.substring(72,76),16)+" ");
                               w_head2.write(Integer.valueOf(scistr.substring(76,80),16)+" ");
                               w_head2.write(Integer.valueOf(scistr.substring(80,84),16)+" ");
                               w_head2.write(Integer.valueOf(scistr.substring(84,88),16)+" ");
                               w_head2.write(Integer.valueOf(scistr.substring(88,92),16)+" ");
                               w_head2.write(Integer.valueOf(scistr.substring(92,96),16)+" ");
                               w_head2.write(Integer.valueOf(scistr.substring(96,100),16)+" ");
                               w_head2.write(Integer.valueOf(scistr.substring(100,104),16)+" ");
                               w_head2.write(Integer.valueOf(scistr.substring(104,108),16)+" ");
                               w_head2.write(Integer.valueOf(scistr.substring(108,112),16)+" ");
                               w_head2.write(Integer.valueOf(scistr.substring(112,116),16)+" ");
                               w_head2.write(Integer.valueOf(scistr.substring(116,120),16)+eol);
                            w_head2.flush();
                            w_head2.write("IntP: "+scistr.substring(120,124)+eol);
                            w_head2.flush();
                            w_head2.write("Type: "+scistr.substring(124,128)+eol);
                            w_head2.flush();
                            w_head2.close();
                        } else if(scistr.substring(6, 8).equals("a5")) {
                            ityp=2;
                            if(init[ityp]) {
                                System.out.println("Science TM not initial: "+scistr.substring(0, 8));
                            }
                            if(scistr.substring(20, 24).equals("0001")) {
                                init[ityp]=true;
                            }
                        } else if(scistr.substring(6, 8).equals("a6")) {
                            ityp=3;
                            bytes=Integer.valueOf(scistr.substring(8, 12),16);
System.out.println(bytes);
                            if(!init[ityp]) {
                                System.out.println("Science initial, previous unfinished: "+scistr.substring(0, 8));
                            }
                            IofObs++;
                            init[ityp]=false;
                            ObsId=scistr.substring(12, 16);
                            w_head3 = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(thisDir+"Sampled/"+"Head_"+ObsId+".txt"), "utf-8"));
                            w_head3.write("Head: "+scistr.substring(0,8)+eol);
                            w_head3.write("Obs.: "+scistr.substring(12,16)+eol);
                            w_head3.write("Temp: "+Integer.valueOf(scistr.substring(24,28),16)+" ");
                               w_head3.write(Integer.valueOf(scistr.substring(28,32),16)+" ");
                               w_head3.write(Integer.valueOf(scistr.substring(32,36),16)+" ");
                               w_head3.write(Integer.valueOf(scistr.substring(36,40),16)+" ");
                               w_head3.write(Integer.valueOf(scistr.substring(40,44),16)+" ");
                               w_head3.write(Integer.valueOf(scistr.substring(44,48),16)+" ");
                               w_head3.write(Integer.valueOf(scistr.substring(48,52),16)+" ");
                               w_head3.write(Integer.valueOf(scistr.substring(52,56),16)+" ");
                               w_head3.write(Integer.valueOf(scistr.substring(56,60),16)+" ");
                               w_head3.write(Integer.valueOf(scistr.substring(60,64),16)+" ");
                               w_head3.write(Integer.valueOf(scistr.substring(64,68),16)+" ");
                               w_head3.write(Integer.valueOf(scistr.substring(68,72),16)+" ");
                               w_head3.write(Integer.valueOf(scistr.substring(72,76),16)+" ");
                               w_head3.write(Integer.valueOf(scistr.substring(76,80),16)+" ");
                               w_head3.write(Integer.valueOf(scistr.substring(80,84),16)+" ");
                               w_head3.write(Integer.valueOf(scistr.substring(84,88),16)+eol);
                            w_head3.flush();
                            w_head3.close();
                                                        
                            w_counts3 = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(thisDir+"Sampled/"+"Counts_"+ObsId+".txt"), "utf-8"));
                            sec=0;
                            scistr0=scistr.substring(88,bytes*2+12);
                            int n_counts=0;
                            boolean more_secs=true;
                            while(more_secs) {
                                if(scistr0.length()>=56) {
                                    n_counts=Integer.valueOf(scistr0.substring(48,56),16);
                                } else {
                                    more_secs=false;
                                }
                                if(scistr0.length()>=56+n_counts*16) {
                                    w_counts3.write("Time: "+Integer.valueOf(scistr0.substring(0,4),16)+" ");
                                        w_counts3.write(Integer.valueOf(scistr0.substring(4,8),16)+" ");
                                        w_counts3.write(Integer.valueOf(scistr0.substring(8,16),16)+eol);
                                    w_counts3.flush();
                                    w_counts3.write("TCP: "+Integer.valueOf(scistr0.substring(16,24),16)+" ");
                                        w_counts3.write(Integer.valueOf(scistr0.substring(24,32),16)+" ");
                                        w_counts3.write(Integer.valueOf(scistr0.substring(32,40),16)+eol);
                                    w_counts3.write("DECF: "+Integer.valueOf(scistr0.substring(40,42),16)+" ");
                                        w_counts3.write(Integer.valueOf(scistr0.substring(42,44),16)+eol);
                                    w_counts3.write("N: "+Integer.valueOf(scistr0.substring(48,56),16)+eol);
                                    w_counts3.flush();
                                    for(int i=0;i<n_counts;i++){
                                        w_counts3.write(scistr0.substring(56+16*i,72+16*i)+eol);
                                    }
                                    scistr0=scistr0.substring(56+n_counts*16);
                                } else {
                                    more_secs=false;
                                }
                            }
                            if(scistr.substring(16, 20).equals("0001")) {
                                init[ityp]=true;
                            }
                       } else if(scistr.substring(6, 8).equals("a7")) {
                            ityp=3;
                            if(init[ityp]) {
                                System.out.println("Science TM not initial: "+scistr.substring(0, 8));
                            }
System.out.println();
                            bytes=Integer.valueOf(scistr.substring(8, 12),16);
                            scistr0=scistr0.concat(scistr.substring(36,bytes*2+12));
                             int n_counts=0;
                            boolean more_secs=true;
                            while(more_secs) {
                                if(scistr0.length()>=56) {
                                    n_counts=Integer.valueOf(scistr0.substring(48,56),16);
                                } else {
                                    more_secs=false;
                                }
                                if(scistr0.length()>=56+n_counts*16) {
                                    w_counts3.write("Time: "+Integer.valueOf(scistr0.substring(0,4),16)+" ");
                                        w_counts3.write(Integer.valueOf(scistr0.substring(4,8),16)+" ");
                                        w_counts3.write(Integer.valueOf(scistr0.substring(8,16),16)+eol);
                                    w_counts3.flush();
                                    w_counts3.write("TCP: "+Integer.valueOf(scistr0.substring(16,24),16)+" ");
                                        w_counts3.write(Integer.valueOf(scistr0.substring(24,32),16)+" ");
                                        w_counts3.write(Integer.valueOf(scistr0.substring(32,40),16)+eol);
                                    w_counts3.write("DECF: "+Integer.valueOf(scistr0.substring(40,42),16)+" ");
                                        w_counts3.write(Integer.valueOf(scistr0.substring(42,44),16)+eol);
                                    w_counts3.write("N: "+Integer.valueOf(scistr0.substring(48,56),16)+eol);
                                    w_counts3.flush();
                                    for(int i=0;i<n_counts;i++){
                                        w_counts3.write(scistr0.substring(56+16*i,72+16*i)+eol);
                                    }
                                    scistr0=scistr0.substring(56+n_counts*16);
                                } else {
                                    more_secs=false;
                                }
                            }
                            if(scistr.substring(20, 24).equals("0001")) {
                                init[ityp]=true;
                            }
                            if(init[ityp]) {
                                w_counts3.close();
                            }
                        } else if(scistr.substring(6, 8).equals("a8")) {
                            ityp=4;
                            if(!init[ityp]) {
                                System.out.println("Science initial, previous unfinished: "+scistr.substring(0, 8));
                            }
                            IofObs++;
                            init[ityp]=false;
                            ObsId=scistr.substring(12, 16);
                            w_head4 = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(thisDir+"Aurora/"+"Head_"+ObsId+".txt"), "utf-8"));
                            w_head4.write("Head: "+scistr.substring(0,8)+eol);
                            w_head4.write("Obs.: "+scistr.substring(12,16)+eol);
                            w_head4.write("Time: "+Integer.valueOf(scistr.substring(24,28),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(28,32),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(32,40),16)+eol);
                            w_head4.flush();
                            w_head4.write("TCP: "+Integer.valueOf(scistr.substring(40,48),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(48,56),16)+eol);
                            w_head4.flush();
                            w_head4.write("Temp: "+Integer.valueOf(scistr.substring(56,60),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(60,64),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(64,68),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(68,72),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(72,76),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(76,80),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(80,84),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(84,88),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(88,92),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(92,96),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(96,100),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(100,104),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(104,108),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(108,112),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(112,116),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(116,120),16)+eol);
                            w_head4.flush();
                            w_head4.write("LBin: "+Integer.valueOf(scistr.substring(120,122),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(122,124),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(124,126),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(126,128),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(128,130),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(130,132),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(132,134),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(134,136),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(136,138),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(138,140),16)+" ");
                              w_head4.write(Integer.valueOf(scistr.substring(140,142),16)+eol);
                            w_head4.flush();
                            w_head4.write("HBin: "+Integer.valueOf(scistr.substring(142,144),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(144,146),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(146,148),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(148,150),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(150,152),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(152,154),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(154,156),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(156,158),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(158,160),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(160,162),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(162,164),16)+eol);
                            w_head4.flush();
                            w_head4.write("TBS: "+Integer.valueOf(scistr.substring(164,166),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(166,168),16)+eol);
                            w_head4.flush();
                            w_head4.write("ACT: "+Integer.valueOf(scistr.substring(168,176),16)+" ");
                            w_head4.write("ACD: "+Integer.valueOf(scistr.substring(176,180),16)+" ");
                            w_head4.write("NBV: "+Integer.valueOf(scistr.substring(180,184),16)+" ");
                               w_head4.write(Integer.valueOf(scistr.substring(184,188),16)+eol);
                            w_head4.flush();
                            w_head4.close();
                        } else if(scistr.substring(6, 8).equals("a9")) {
                            ityp=4;
                        } else {
                            System.out.println("Other Science TM?");
                        }
                    }
                    Thread.sleep(5000);
                    siz=egse.dhpu.getScienceTm().size();
                    System.out.println("Downloaded "+IofObs+" observations; NofScienceTMs="+siz);
                }
            } catch (IOException e){
                printStepStatus("6.8.5-3", false, e.getMessage());
                throw e;
            }
     }
*/    

    private String fill(int length, String with) {
        StringBuilder sb = new StringBuilder(length);
        while (sb.length() < length) {
            sb.append(with);
        }
        return sb.toString();
    }

    private String logTime() {
        Date date = new Date();

        return String.format("%tY-%<tm-%<td %<tT", date);
    }

}